Genetic Epidemiology - Research |
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Research |
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The focus of genetic epidemiological research of the
Department of
Epidemiology is on complex genetic
disorders. Three lines of research can be distinguished.
The first line addresses the relationship between genetic
factors and risk of disease, in particular in relation
to gene-gene and gene-environment interaction. Studies
are primarily conducted within the Rotterdam Study,
a population-based study of 10,000
subjects age 55 years and over. For instance, the role
of the apolipoprotein E gene in the diagnosis, etiology
and progression of Alzheimer’s disease and related
disorders has been
examined. Further, the interaction between this gene
and environmental factors such as smoking and post-menopausal
estrogen use has been studied. Other genes studied in
the Rotterdam Study include IGF-I, PRNP, HFE, ACE, NOS,
and COL2A1.
The second
line of research aims to identify new genetic factors
involved in complex genetic disorders using family
as well as population-based approaches. These studies
focus on neuropsychiatric diseases, cardiovascular
disease and metabolic diseases. Several studies using
linkage and sibpair analysis are ongoing. The focus
of research within this line of research is on genetic
isolated populations. These studies are primarily
conducted in an isolated population in the South West
of the Netherlands comprising 20,000 inhabitants.
Genome screens concerning several disorders are ongoing.
The third
line of research specfically targets methods
and statistical analysis of genetic epidemiologic
research. This line of research is embedded within
the emperical studies conducted in the first two lines
of research. Specifically sib-pair studies and research
in isolated populations is targetted. Further, the
education for the MSc, DSc and PhD programme is embedded
in this research line. Several
courses on the design and statistical analysis
of genetic studies are taught as part of the research
programme organised by the Netherlands Institute of
Health Sciences (NIHES).
There is a close collaboration
within the Erasmus Medical Center with the Department
of Clinical Genetics. This has resulted in a joint
Genetic Epidemiologic Unit which included expertise
in clinical, molecular biologic and statistical aspects
of genetic research. Further, there is a collaboration
with several clinical groups including internal medicine,
neurology and childhood psychiatry. |
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Population-based
studies |
The challenge
for the near future for genetic epidemiological research
will be the identification of genes involved in the
etiology of common late-onset disorders, like diabetes,
cardiovascular disease and dementia. In these “complex”
genetic disorders the risk associated with a mutation
may depend for a large part on interaction with other
genetic or environmental risk factors. There is increasing
interest in population based studies of these disorders.
These concern primarily candidate gene studies.
Involvement
of a particular gene in the pathogenesis of disease
may be suspected based on the gene product, the protein,
or homology of the gene or protein to a gene or protein
that is known to be involved in the disease. To determine
whether a candidate gene is involved, DNA variations
in the gene can be studied. The rationale of this
approach is that if there is a causal relationship,
a particular mutation should at least be present more
often in cases than in unaffected relatives or unrelated
controls.
Genetic
epidemiological studies are extremely valuable in distinguishing
between causes and consequences of disease, because
genetic information remains stable over time. The
role of several common genes in the pathogenesis of
disease is
investigated in the setting of the Rotterdam Study.
This is a single-centre prospective follow-up study
in which 7,983 residents aged 55 years and over of
the Rotterdam suburb Ommoord participate (response
rate 78%). The aim of the study is to investigate
determinants of chronic and disabling cardiovascular,
neurodegenerative, locomoter and ophthalmologic diseases.
Further, the pathway through which a gene is involved
in a disease is examined. Specific genes that are
currently being investigated in the Rotterdam study
are: the apolipoprotein E gene (APOE), the gene for
Insulin-Like growth factor I ( IGF-I), the hemochromatosis
susceptibility gene (HFE), the angiotensine-converting
enzyme
gene (ACE) and the gene for Nitric-oxide synthethase
(eNOS).
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Insulin-like
growth factor-I |
Insulin-like growth factor-I, one of the somatomedines,
belongs to the family of peptide hormones and has
high structural similarity with pro-insulin. IGF-I
is produced in liver, bone cells and other tissues
and stimulates somatic growth and is involved in cell
growth and metabolism. IGF-I serum levels are involved
in pathogenesis of diseases, such as diabetes, cardiovascular
diseases, cancer and osteoporosis. Levels are influenced
by growth hormone (GH), insulin and nutrition, but
these factors only partly explain the wide variation
in the levels. studies on the role of IGF-I have been
hampered by the fact that circulating IGF-I levels
do not necessarily reflect the local production of
IGF-I in specific tissues, such as pancreatic beta
cells, myocardium or bone cells. Over 90% is bound
to specific IGF binding proteins, of which IGF-BP3
is the most frequent. a genetic polymorphism in the
promoter region of IGF-I has been identified, which
may influence the IGF-I production. In the Rotterdam
Study 7,012 subjects have been typed to study the
functionality of the IGF-I gen.
In our research
projects we assess:
- Relation of polymorphisms to serum levels and
body height
- Relation of genetic variation to vascular pathology,
diabetes, cancer, neurologic disease, bone disorders
and mortality
- Interaction between IGF-I polymorphisms and other
genetic and non-genetic factors.
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Hemochromatosis,
population-based studies |
Hemochromatosis is a common recessive disorder in
populations of Caucasian origin. The disease is characterized
by iron accumulation in the tissues of many organs
throughout the body. Increased iron stores have been
associated with a wide spectrum of disease including
cardio and cerebro-vascular diseases, diabetes, cancer,
bone and liver diseases. Several mutations have been
described; the most common ones are the C282Y and
H63D mutations of the HFE gene located on chromosome
6. There are scarcity of reports on the penetrance,
clinical expression and pathology of the know HFEmutations
in the elderly. Moreover, not all hemochromatosis
patients carry the known mutations, suggesting that
other genes are involved.
We are studying
the frequency, penetrance and clinical expression
of the known HFE mutations through genotyping participants
in a population-based study: The Rotterdam Study.
The Rotterdam Study is a population-based study of
7,893 subjects aged 55 years and over. In this study,
cardiovascular, neurological and endocrine disorders
have been studied in relation to their genetic and
non-genetic risk factors.
Studies
done:
- A population-based study of the effect of the
HFE C282Y and H63D mutations on serum iron levels
in the elderly
- HFE gene mutations and liver function in the elderly
- Does serum bilirubin projects against HFE related
pathologies?
Studies
in progress:
- HFE gene mutations, hypertension, myocardial infarction
and atherosclerosis.
- HFE gene mutations and risk of arthropathies and
joint pains
- Mutations in the HFE gene and risk of neurological
disorders: Alzheimer's disease, vascular dementia
and parkinsonism
- Survival in patients with the HFE C282Y and H63D
gene mutations
- HFE and cancer
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ACE |
Angiotensin Converting Enzyme (ACE) has been involved
in several common disorders including hypertension,
cardiovascular disease and Alzheimer's disease. Studies
on the role of the common insertion/deletion (I/D)
polymorphism in the ACE gene in the development of
diease have been hampered by small sample size. Further,
the role of ACE in different chronic disorders has
not been approached simultaneously. We are studying
the functional and clinical effects on the I/D polymorphism
in ACE in several disorders in the Rotterdam Study.
We assess:
- The relation of polymorphism to serum levels of
ACE
- The relation of genetic variation to vascular
pathology, diabetes, neurologic disease, and mortality
- The interaction between the ACE polymorphism and
other genetic and non-genetic factors.
For more information on this
project: |
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Family based
studies |
The most
successful approach to identify new genes in disorders
has been a search of the full genome in families.
Linkage anlaysis has been a powerful approach for
genome screening. In the past decade considerable
progress has been made in unravelling the etiology
of important single gene diseases such as Huntington's
disease and cystic fibrosis. Within the genetic epidemiologic
unit several linkage projects are ungoing in collaboration
with the Department of Clinical Genetics. These studies
concern families in which a disease transmitted as
a Mendelian trait. The challenge for the near future
in genetic research will be to unravel the genetic
etiology of common diseases such as cardiovascular
diseases, diabetes mellitus, osteoporosis, osteoarthtitis
and unipolar depression. Findings on the genetics
of these complex disorders have often been equivocal.
There may be several explanations for this. Firstly,
different genes may play a role in different families
and different disease genes may even be involved in
a single family, which may result in false exclusion
of linkage. Secondly, false negative findings may
occur when the disease is the result of the interplay
of different genetic and enviromental factors. An
alternative approach is to examine affected sib-paires.
Within the unit, affect sib-pair studies of osteoarthritis
are in progress. We are further studying families
with Alzheimer's disease, Parkinson's disease and
hematochromatosis. |
Research
in genetically isolated populations |
To unravel
the genetics of a complex disease requires a different
strategy. In recent years there has been growing interest
in mapping disease genes in genetically isolated populations.
Complex traits are expected to be more homogeneous
in these populations. Due to the small number of founders,
the total gene pool and therewith the number of different
genes involved in a trait is limited. This increases
the chances of success of genetic research considerably.
Genetic variation will be reduced further as a consequence
of genetic drift. For this reason, it has been suggested
to focus on populations of prolonged isolation such
as the Finnish. Although there is an ongoing debate
on the question whether these old populations are
suitable for genetic association studies, several
studies of complex disorders including multkiple sclerosis,
hypercholesteremia and osteoarthritis have proven
to be highly successful.
In 1995
we have started our research program "Genetic
Research in Isolated Populations" (GRIP). This
program is conducted in a genetically isolated population
in the Southwest of the Netherlands. As part of the
GRIP program, we have studied several complex genetic
disorders including diabetes mellitus type 1 and 2,
Parkinson's disease and Alzheimer's disease. Using
municipal records and genealogical databases of this
isolated population of 20,000 residents, we were able
to link most of the patients of each disorder to a
common ancestor. For two disorders, diabetes type
II and Parkinson's disease, we have successfully finished
the genome screen while the analysis in Alzheimer
patients and diabetes type 1 are still ongoing. For
diabetes type 2 we were able to localise a region.
This region was associated with increased fasting
glucose levels in first degree relatives, suggesting
this segment harbours most likely a gene involved
in the pathogenesis of diabetes in the GRIP population.
Also for Parksinson's disease, a disorder with a relatively
low heritability, we have been able to localise a
susceptibility region in GRIP. |
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Methods |
The study of complex genetic traits necessitates the
development of new statistical methods. A genetic
trait is complex when several genetic and environmental
factors are involved. Often, the contribution of a
genetic factor is small and therefore, genes are difficult
to detect. Moreover interaction between a gene and
an enviromental factor may exist. Thus finding a good
link function between trait values and covariates,
choosing the right study design and adjusting for
the covariates is very important to have enough power
to detect genes.
The traits
studied may be binary or quantitative. An example
of a binary trait is myocardial infarction and of
a quantitative trait is blood pressure. Often quantitiative
factors are involved in the etiology of diseases,
e.g. levels of cholesterol may predict myocardial
infarction. For late onset diseases such as Alzheimer's
disease, detection of genes is even more difficult,
because not much family information is available and
because of competing risks with other diseases.
In Rotterdam
we study genetic factors in samples of families, of
isolated populations and of the general poulation
(Rotterdam Study). The amount of relatedness decreases
from a family, via the isolated population to the
general population. Therefore different samples can
be used in different stages of the analysis of identifying
genetic factors. We are mainly interested in two aspects
of genetic epidemiology, namely estimation of the
location of a gene and estimation of the relation
between a candidate gene and the trait.
Estimation
of the location of a gene can be carried out using
family data. These may concern large pedigrees
or sibpairs. Here the segregation of marker alleles
and the trait in relatives is studied. If a marker
is linked to the trait gene, they will tend to segregate
together. However, fine mapping of genes involved
in complex diseases using linkage methods requires
a huge number of families and therefore unrelated
individuals from isolated or general population are
often used for this purpose. The latter studies may
often concern studies of candidate genes.
Candidate
genes are genes for which evidence exists that they
are involved in etiology of the trait. They may be
located in candidate regions or there may be biological
reasons to consider a gene as a candidate gene. Estimation
and verification of the relation between a candidate
gene and a trait in a certain population requires
genetic knowledge of this population. Here we enter
the field of population genetics. An issue playing
a role here is the possibility that the population
is a mixture of subpopulation with different genetic
background. Note that this may also play a role in
linkage disequilibrium mapping.
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